Protein-Protein Interaction

LCLS Web Portal

Saturday, October 11, 2008

Lab for Computational Life Sciences
Web Applications

MDSimAid Recommender
If you have your PDB, PSF, and parameter (PAR,INP,etc.) files and are ready to start a simulation, first have MDSimAid create configuration files with optimized parameters.



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Protein-Protein Interaction
If you wish to determine potential interactions of proteins, you can visit the PPI portal. All you need is a protein structure database of your choosing, and a training and testing set. Or, you can run a simulation with sample data provided by the portal.